Hold on to your taste buds! You are just about to witness the best egg muffin recipe with these Ham and Cheese Egg Cups. This is not your typical egg muffin. No, these are homemade, and fresh, and will make your taste buds jump for joy.

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Why This Recipe Works
- High in Protein: Keeps you full until lunch.
- Make-Ahead: Prepare and store in the fridge for up to 4 days.
- Quick & Easy: Perfect for a fast breakfast option.
- Delicious: Ham and cheese add great flavor.
📋 Ingredients
- Large Eggs
- Milk
- Salt
- Black Pepper
- Shredded Cheddar Cheese
- Diced Ham
- Nonstick Cooking Spray
- Chopped Red Bell Pepper
- Chives
For the complete list of ingredients with measurements and instructions, please see the recipe card at the bottom of the post.
🔀 Substitutions & Variations
- Green Onions: Can replace chives in your breakfast egg muffins, offering a more intense onion flavor that complements ham and cheese well.
- Mozzarella Cheese: Using mozzarella cheese instead of cheddar in cheese egg muffins adds a lighter, creamier texture, enhancing the dish with a delicate, melt-in-your-mouth quality.
- Cottage Cheese: If you are looking for a lower-fat option, you can use cottage cheese in place of the shredded cheese. Just make sure to drain any excess liquid from the cottage cheese before adding it to the egg mixture.
🔪How to Make Ham and Cheese Egg Cups?
- The first thing you need to do is preheat your oven to 350°F.
- Next, prepare a 12-cup muffin tin by spraying it with nonstick cooking spray.
- In a large bowl, whisk together the eggs, milk, salt and pepper. Stir in the cheddar cheese and diced ham.
- Add chopped-up bell pepper and the chives.Divide the mixture evenly among the muffin cups
- Bake for 20 to 22 minutes, or until the egg cups are firm and golden brown around the edges.
- Serve your ham and cheese egg muffins immediately and Enjoy!

👩🍳 Expert Tips
- Cheese Selection: Opt for sharp cheddar for a richer, more pronounced flavor in your egg cups.
- Ham Quality: Choose high-quality, thinly sliced ham for easy molding into the muffin cups and a delicious taste.
- Egg Freshness: Fresh, large eggs are key for the best texture and flavor; they bind the ingredients well.
💭 FAQs
Yes, you can! If you would like to make these egg cups in the air fryer, simply place them in silicone muffin liners and place them in the air fryer basket. Cook at 400°F for 8 to 10 minutes, or until they are firm and golden brown.
Yes, you can exclusively use egg whites to make Ham and Cheese Egg Cups, offering a lighter, lower-fat option that still delivers on taste.
Yes, you can make Egg Muffins in an Instant Pot using silicone muffin cups or a compatible egg bite mold. This method steams the egg muffins, ensuring they’re uniformly cooked and moist.
Refrigerate promptly, within two hours of preparation, to prevent bacterial growth. Consume within 3-4 days for optimal taste and quality. Individually wrap each muffin cup in plastic or foil, seal in a freezer bag, remove excess air, label with date for freshness, and freeze for 2-3 months.
Serving Suggestions
These are my favorite sides to serve with Ham and Cheese Egg Cups:
- Garlic Mashed Potatoes: Creamy, garlicky side that complements the richness of the egg cups.
- Air Fryer Roasted Potatoes: Quick, crispy potatoes with a fraction of the oil, perfect for a lighter side.
- Crispy Hash Browns: Crunchy, golden hash browns add texture and heartiness to your breakfast plate.
🍜 Related Recipes
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Ham and Cheese Egg Cups
Ingredients
- 6 Eggs
- ½ cup Milk
- ¼ teaspoon Salt
- ⅛ teaspoon Black Pepper
- 1 cup Cheddar Cheese Shredded
- ½ cup Diced Ham
- Cooking Spray
- ¼ cup Red Bell Pepper
- ¼ cup Chives
Instructions
- The first thing you need to do is preheat your oven to 350°F.
- Then, prepare a 12-cup muffin tin by spraying it with nonstick cooking spray.
- In a large bowl, whisk together the eggs, milk, salt and pepper.
- Stir in the cheddar cheese and diced ham.
- Add chopped-up bell pepper and the chives.
- Divide the mixture evenly among the muffin cups.
- Bake for 20 to 22 minutes, or until the egg cups are firm and golden brown around the edges.
- Serve your ham and cheese egg muffins immediately and enjoy!
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